Index

A

add() (pysces.PyscesPlot2.FIFOBuffer method)

axisInputStringToList() (pysces.PyscesPlot2.PlotBase method)

C

closeAll() (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PyscesUPI method) CommonStyleDefs (pysces.PyscesPlot2.GnuPlotUPI attribute) (pysces.PyscesPlot2.MatplotlibUPI attribute) (pysces.PyscesPlot2.PlotBase attribute) ConvertFileD2U() (in module pysces.PyscesUtils) ConvertFileU2D() (in module pysces.PyscesUtils)

convertSBML2PSC() (pysces.PyscesInterfaces.Core2interfaces method) CopyModels() (in module pysces.PyscesUtils) CopyTestModels() (in module pysces.PyscesUtils) core (pysces.PyscesInterfaces.Core2interfaces attribute) Core2interfaces (class in pysces.PyscesInterfaces) core2psc (pysces.PyscesInterfaces.Core2interfaces attribute) core2sbml (pysces.PyscesInterfaces.Core2interfaces attribute)

D

DATF_FORMAT (pysces.PyscesPlot2.GnuPlotUPI attribute) DEBUGLEVEL (pysces.PyscesLink.SBWLayoutWebLink attribute) DEBUGMODE (pysces.PyscesLink.SBWLayoutWebLink attribute)

doEModes() (pysces.PyscesLink.METATOOLlink method) drawNetworkGetSBMLwithLayout() (pysces.PyscesLink.SBWLayoutWebLink method) DRAWNETWORKLOADED (pysces.PyscesLink.SBWLayoutWebLink attribute) drawNetworkLoadSBML() (pysces.PyscesLink.SBWLayoutWebLink method)

E

export() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) exportArray2CSV() (pysces.PyscesUtils.WriteOutput method) exportArray2TXT() (pysces.PyscesUtils.WriteOutput method)

exportLabelledArray() (pysces.PyscesUtils.WriteOutput method) exportLabelledArray2CSV() (pysces.PyscesUtils.WriteOutput method) exportLabelledArray2TXT() (pysces.PyscesUtils.WriteOutput method) exportLabelledArrayWithHeader() (pysces.PyscesUtils.WriteOutput method) exportLabelledArrayWithHeader2CSV() (pysces.PyscesUtils.WriteOutput method) exportLabelledArrayWithHeader2TXT() (pysces.PyscesUtils.WriteOutput method) exportLabelledLinkedList() (pysces.PyscesUtils.WriteOutput method)

F

FIFOBuffer (class in pysces.PyscesPlot2)

G

g (pysces.PyscesPlot2.PyscesUPI attribute) g_file_write_array() (pysces.PyscesPlot2.GnuPlotUPI method) g_file_write_array3D() (pysces.PyscesPlot2.GnuPlotUPI method) g_pause() (pysces.PyscesPlot2.GnuPlotUPI method) g_write() (pysces.PyscesPlot2.GnuPlotUPI method) get() (pysces.PyscesPlot2.FIFOBuffer method)

getEModes() (pysces.PyscesLink.METATOOLlink method) getSBML() (pysces.PyscesLink.SBWLayoutWebLink method) getSBMLlayout() (pysces.PyscesLink.SBWLayoutWebLink method) getSVG() (pysces.PyscesLink.SBWLayoutWebLink method) getVersion() (pysces.PyscesLink.SBWLayoutWebLink method) GnuPlotUPI (class in pysces.PyscesPlot2)

H

hold() (pysces.PyscesPlot2.MatplotlibUPI method)

I

isnotebook() (pysces.PyscesPlot2.MatplotlibUPI method)

L

layoutModuleGetSVG() (pysces.PyscesLink.SBWLayoutWebLink method) LAYOUTMODULELOADED (pysces.PyscesLink.SBWLayoutWebLink attribute)

layoutModuleLoadSBML() (pysces.PyscesLink.SBWLayoutWebLink method) loadSBMLFileFromDisk() (pysces.PyscesLink.SBWLayoutWebLink method) loadSBMLFromString() (pysces.PyscesLink.SBWLayoutWebLink method)

M

m (pysces.PyscesPlot2.PyscesUPI attribute) MatplotlibUPI (class in pysces.PyscesPlot2) MAX_OPEN_WINDOWS (pysces.PyscesPlot2.MatplotlibUPI attribute) METATOOLlink (class in pysces.PyscesLink) module pysces.PyscesInterfaces pysces.PyscesLink pysces.PyscesPlot2 pysces.PyscesUtils

moduleDict (pysces.PyscesLink.SBWlink attribute) modules (pysces.PyscesLink.SBWlink attribute)

N

normal_timer() (pysces.PyscesUtils.TimerBox method)

P

p_activateInterface() (pysces.PyscesPlot2.PyscesUPI method) p_deactivateInterface() (pysces.PyscesPlot2.PyscesUPI method) p_setInterface() (pysces.PyscesPlot2.PyscesUPI method) PAUSE_TIME (pysces.PyscesPlot2.GnuPlotUPI attribute) plot() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) PlotBase (class in pysces.PyscesPlot2) plotLines() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method)

psbw (pysces.PyscesLink.SBWlink attribute) pyplot (pysces.PyscesPlot2.MatplotlibUPI attribute) pysces.PyscesInterfaces module pysces.PyscesLink module pysces.PyscesPlot2 module pysces.PyscesUtils module PyscesUPI (class in pysces.PyscesPlot2)

R

readMod2Core() (pysces.PyscesInterfaces.Core2interfaces method) readSBMLToCore() (pysces.PyscesInterfaces.Core2interfaces method) replot() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.PyscesUPI method)

replotAndWait() (pysces.PyscesPlot2.GnuPlotUPI method) reset_step() (pysces.PyscesUtils.TimerBox method)

S

save() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) sbml (pysces.PyscesInterfaces.Core2interfaces attribute) (pysces.PyscesLink.SBWLayoutWebLink attribute) sbml2core (pysces.PyscesInterfaces.Core2interfaces attribute) sbml_level (pysces.PyscesInterfaces.Core2interfaces attribute) sbml_version (pysces.PyscesInterfaces.Core2interfaces attribute) sbmllayout (pysces.PyscesLink.SBWLayoutWebLink attribute) sbw (pysces.PyscesLink.SBWlink attribute) SBW_exposeAll() (pysces.PyscesLink.SBWlink method) SBW_getActiveModules() (pysces.PyscesLink.SBWlink method) SBW_loadModule() (pysces.PyscesLink.SBWlink method) sbwhost (pysces.PyscesLink.SBWLayoutWebLink attribute) SBWLayoutWebLink (class in pysces.PyscesLink) SBWlink (class in pysces.PyscesLink) sbwModuleProxy (pysces.PyscesLink.SBWlink attribute) set() (pysces.PyscesPlot2.GnuPlotUPI method) setAxisLabel() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) setDataFileNumberFormat() (pysces.PyscesPlot2.GnuPlotUPI method) setGraphTitle() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) setGrid() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) setKey() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method)

setLineWidth() (pysces.PyscesPlot2.MatplotlibUPI method) setLogScale() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) setMultiplot() (pysces.PyscesPlot2.GnuPlotUPI method) setNoLogScale() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) setOrigin() (pysces.PyscesPlot2.GnuPlotUPI method) setProxy() (pysces.PyscesLink.SBWLayoutWebLink method) setRange() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.MatplotlibUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) setSize() (pysces.PyscesPlot2.GnuPlotUPI method) setSizeAndOrigin() (pysces.PyscesPlot2.GnuPlotUPI method) setTerminal() (pysces.PyscesPlot2.GnuPlotUPI method) showEModes() (pysces.PyscesLink.METATOOLlink method) splot() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) splotSurfaces() (pysces.PyscesPlot2.GnuPlotUPI method) (pysces.PyscesPlot2.PlotBase method) (pysces.PyscesPlot2.PyscesUPI method) step_timer() (pysces.PyscesUtils.TimerBox method) stop() (pysces.PyscesUtils.TimerBox method) str2bool() (in module pysces.PyscesUtils) svg (pysces.PyscesLink.SBWLayoutWebLink attribute)

T

Terminals (pysces.PyscesPlot2.GnuPlotUPI attribute)

TimerBox (class in pysces.PyscesUtils)

U

unset() (pysces.PyscesPlot2.GnuPlotUPI method) unsetMultiplot() (pysces.PyscesPlot2.GnuPlotUPI method)

urlGET() (pysces.PyscesLink.SBWLayoutWebLink method) urlPOST() (pysces.PyscesLink.SBWLayoutWebLink method)

V

VersionCheck() (in module pysces.PyscesUtils)

W

wait() (pysces.PyscesPlot2.PlotBase method) writeCore2PSC() (pysces.PyscesInterfaces.Core2interfaces method) writeCore2SBML() (pysces.PyscesInterfaces.Core2interfaces method)

writeMod2PSC() (pysces.PyscesInterfaces.Core2interfaces method) writeMod2SBML() (pysces.PyscesInterfaces.Core2interfaces method) WriteOutput (class in pysces.PyscesUtils)